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EEDFP Research Project

A hub for all research pertaining to Eco-Evolutionary Dynamics of Fluctuating Populations

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Relevant Papers

Social interaction in synthetic and natural microbial communities

7th September 2022 by Mauro Mobilia

URL: https://www.embopress.org/doi/full/10.1038/msb.2011.16 Author: Joao B Xavier Journal Ref.: Molecular Systems Biology 7, 483 (2011). Abstract: Social interaction among cells is essential for multicellular complexity. But how do molecular networks within individual cells confer the ability … Read more

Categories Experimental Work, Relevant Papers

Cooperation and Hamilton’s rule in a simple synthetic microbial system

7th September 2022 by Mauro Mobilia

URL: https://doi.org/10.1038/msb.2010.57 Authors: John S Chuang, Olivier Rivoire, and Stanislas Leibler Journal Ref.: Molecular Systems Biology 6, 398 (2010). Abstract: A fundamental problem in biology is understanding the evolutionary emergence and maintenance of altruistic behaviors. … Read more

Categories Experimental Work, Relevant Papers

Antibiotic-induced population fluctuations and stochastic clearance of bacteria

7th September 2022 by Mauro Mobilia

URL: https://doi.org/10.7554/eLife.32976 Authors: Jessica Coates, Bo Ryoung Park, Dai Le, Emrah Şimşek, Waqas Chaudhry, and Minsu Kim Journal Ref.: eLife 7:e32976 (2018). Abstract: Effective antibiotic use that minimizes treatment failures remains a challenge. A better … Read more

Categories Experimental Work, Relevant Papers

Carrying Capacity of Spatially Distributed Metapopulations

7th September 20227th September 2022 by Mauro Mobilia

URL: https://doi.org/10.1016/j.tree.2020.10.007 Authors: Bo Zhang, Donald L. DeAngelis, and Wei-Ming Ni Journal: Trends in Ecology & Evolution, 36, 164-173 (2021) Abstract: Carrying capacity is a key concept in ecology. A body of theory, based on … Read more

Categories Relevant Papers, Spatial models

Feedback between Population and Evolutionary Dynamics Determines the Fate of Social Microbial Populations

8th August 2022 by Matthew Asker

Abstract: The evolutionary spread of cheater strategies can destabilize populations engaging in social cooperative behaviors, thus demonstrating that evolutionary changes can have profound implications for population dynamics. At the same time, the relative fitness of … Read more

Categories Experimental Work, Relevant Papers, Well-mixed models

A modified next reaction method for simulating chemical systems with time dependent propensities and delays

11th May 2022 by Matthew Asker

Abstract: Chemical reaction systems with a low to moderate number of molecules are typically modeled as discrete jump Markov processes. These systems are oftentimes simulated with methods that produce statistically exact sample paths such as … Read more

Categories Code, Relevant Papers

Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels

11th May 2022 by Matthew Asker

Abstract: There are two fundamental ways to view coupled systems of chemical equations: as continuous, represented by differential equations whose variables are concentrations, or as discrete, represented by stochastic processes whose variables are numbers of … Read more

Categories Code, Relevant Papers

Exclusion of the fittest predicts microbial community diversity in fluctuating environments

11th May 2022 by Matthew Asker

Abstract: Microorganisms live in environments that inevitably fluctuate between mild and harsh conditions. As harsh conditions may cause extinctions, the rate at which fluctuations occur can shape microbial communities and their diversity, but we still … Read more

Categories Relevant Papers, Well-mixed models

Moran dynamics in spatially heterogeneous environments with periodic fitness distribution

11th May 2022 by Matthew Asker

Abstract: Local environmental interactions are a major factor in determining the success of a new mutant in structured populations. Spatial variations of concentration of a resource change the fitness of competing strategies locally and thus … Read more

Categories Relevant Papers, Well-mixed models

Periodic temporal environmental variations induce coexistence in resource competition models

11th May 2022 by Matthew Asker

Abstract: Natural ecosystems, in particular on the microbial scale, are inhabited by a large number of species. The population size of each species is affected by interactions of individuals with each other and by spatial … Read more

Categories Relevant Papers, Well-mixed models
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  • About
  • Relevant Papers
    • Spatial models
    • Well-mixed models
    • Experimental Work
  • Code
  • Seminars & Talks
  • Publications & Preprints
  • People